rs29787856 SNP Detail

Summary

• ID
  rs29787856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23805629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGCTCTT TACGCACTGA
  ATCGCTCAAT GCTTAAGATT CTATCTCTAA ATCATTCTGC TATCTCCCTT AAAAGTTATC
  GACGTGGCAG CCGGGAGTAA ACTACTTCAT TCCCATGGTC TCTAAGGGTC ACTTGTGGGA
  TATGAACTTA CCCACCACCA CCACACATAC AGGAGATTAT GTACAGACCT TCAGATAGCT
  R
  AGCTAGAGTT AACACCATTG CGCACACCCA CATATCCCCA GCCTCCTCTG CTAAGCTCAG
  CCCACTAAGG TTTGTTCCCA CCCTAACCAC ACCCCCTGTG AATGTGCAAC AGCTCTTTTA
  CTGAGAGTTG TGGGTGGCTC TGAAAAGAGC CTTTGGGTTG TTGGGCTTCT AAGCAGTTGG
  CCAAAGAAAA TTTACTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47381746	NES11354413	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	G		A	G	A	A		A
ss324290403	CHEV_13_23713515	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29787856					SNP	A	A	A	A	G	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47381746	NES11354413	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23805629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5367	CpG island 5367	188 bp distal
Cpgi5368	CpG island 5368	387 bp proximal
Gm11398	predicted gene 11398	597 bp upstream
H1f4	H1.4 linker histone, cluster member	131 bp downstream
H2bc6	H2B clustered histone 6	538 bp upstream
Rr403657	regulatory region 403657	276 bp downstream
Rr475906	regulatory region 475906	563 bp distal
Rr475907	regulatory region 475907	32 bp distal
Rr475908	regulatory region 475908	515 bp proximal
Rr475909	regulatory region 475909	902 bp proximal
Tssr118843	transcription start site region 118843	205 bp upstream
Tssr118844	transcription start site region 118844	349 bp upstream
Tssr121728	transcription start site region 121728	531 bp upstream
Tssr121729	transcription start site region 121729	243 bp downstream
Tssr121730	transcription start site region 121730	291 bp downstream
Tssr121731	transcription start site region 121731	344 bp downstream
Tssr121732	transcription start site region 121732	371 bp downstream
Tssr121733	transcription start site region 121733	902 bp downstream