rs29787862 SNP Detail

Summary

• ID
  rs29787862
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23806088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTAGGCT TTACCGTTTT
  CGCCTTGGCA GGGCTCTTGG GCGCCTTCTT AGCCTTAGTT GCCTTTGCCT TCTTCGGGCT
  CTTAGCTTTT TTGGCTCCTG CAGCTGCAGC TGGCTTCTTC GCTTTCTTTG GAGTCTTCTT
  GGTGCTCTTC TTGGCGGTGG CTGTCCCCGC AGCCTTCTTG GGCTTCTTGG CTGCGCCCGC
  R
  GGCTTCTTCG CCTTGGCCGC GCCTGCCCTT TTTGCTTTGG GCTTAGCCTC ACCGGAAGCC
  GCCTTCTTGT TGAGTTTGAA GGAGCCGGAG GCGCCGGTGC CCTTGGTCTG CACCAGGGTA
  CCCTTGCTCA CCAGGCTCTT CAGGCCGAGC TTGATGCGGC TGTTGTTCTT CTCCACATCG
  TACCCCGCGG CCGCCAGCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47381752	NES11354415	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	G		G	G	A	A		A
ss324290406	CHEV_13_23713974	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29787862					SNP	A	A	A	A	G	A	A	A	A	G	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47381752	NES11354415	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23806088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5367	CpG island 5367	647 bp distal
Cpgi5368	CpG island 5368	within coordinates
Gm11398	predicted gene 11398	1056 bp upstream
H1f4	H1.4 linker histone, cluster member	within coordinates
H2bc6	H2B clustered histone 6	997 bp upstream
Rr403657	regulatory region 403657	735 bp downstream
Rr475906	regulatory region 475906	1022 bp distal
Rr475907	regulatory region 475907	491 bp distal
Rr475908	regulatory region 475908	56 bp proximal
Rr475909	regulatory region 475909	443 bp proximal
Tssr118843	transcription start site region 118843	233 bp downstream
Tssr118844	transcription start site region 118844	54 bp downstream
Tssr121728	transcription start site region 121728	990 bp upstream
Tssr121729	transcription start site region 121729	174 bp upstream
Tssr121730	transcription start site region 121730	116 bp upstream
Tssr121731	transcription start site region 121731	102 bp upstream
Tssr121732	transcription start site region 121732	within coordinates
Tssr121733	transcription start site region 121733	443 bp downstream