rs29788640 SNP Detail

Summary

• ID
  rs29788640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46657019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA CTTCGATTTG CTGGGGTTTT
  R
  TTAGAATACA AGCCTGCTGA GGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39119268	mCV24524767	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148973669	ENSMUSSNP488651	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss324333705	CHEV_13_46598912	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29788640					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46657019 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	within coordinates
Cpgi5539	CpG island 5539	910 bp distal
Gm35110	predicted gene, 35110	1618 bp upstream
Gm61509	predicted gene, 61509	within coordinates
Rr478915	regulatory region 478915	1685 bp distal
Rr478916	regulatory region 478916	1584 bp distal
Rr478917	regulatory region 478917	1367 bp distal
Rr478918	regulatory region 478918	628 bp distal
Rr478919	regulatory region 478919	513 bp distal
Tssr119597	transcription start site region 119597	1658 bp downstream
Tssr119598	transcription start site region 119598	1627 bp downstream
Tssr119599	transcription start site region 119599	1495 bp downstream
Tssr119600	transcription start site region 119600	1436 bp downstream
Tssr119601	transcription start site region 119601	1403 bp downstream
Tssr119602	transcription start site region 119602	1356 bp downstream
Tssr119603	transcription start site region 119603	629 bp downstream
Tssr122343	transcription start site region 122343	749 bp upstream