rs29788655 SNP Detail

Summary

• ID
  rs29788655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23806490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGAGCG CAGCCAGGGA
  CACGCCGCTG CGCTCCTTGG AGGCGGCCAC AGCCTTGGTG ATGAGTTCGG ACACCGGGGG
  TCCGGAGGTT TTGCGCTTCG CGCCACCTGC GGCCTTGCGG GCCTTCTTCT TGACGGGTGT
  CTTCTCGGCG GGGGCCGGTG CGGCGGGCGC AGCAGGCGCG GTCTCGGACA TGGCGAAGCG
  Y
  GTGAGGAGAG AGAACTCGAG CCGGAAGCAG AGGGACTGGC CAGGACTCGG GCCGCGGCGC
  TGCGCCCGCC CGTTTATATA GGGCGGAGCT GCGCCGTGAT TGGTGCGCTG TCCAGCCCGC
  CTCGCTGGCA GCCGCGGAGT GTCCTCTCAG ATGCGGAGTT GTGTTTGTTA CACCTCAAAA
  AAAGCCAAAA ATGTCAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47381755	NES11354416	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29788655					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47381755	NES11354416	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23806490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5367	CpG island 5367	1049 bp distal
Cpgi5368	CpG island 5368	within coordinates
Gm11398	predicted gene 11398	1458 bp upstream
H1f4	H1.4 linker histone, cluster member	within coordinates
H2bc6	H2B clustered histone 6	1399 bp upstream
Rr403657	regulatory region 403657	1137 bp downstream
Rr475906	regulatory region 475906	1424 bp distal
Rr475907	regulatory region 475907	893 bp distal
Rr475908	regulatory region 475908	325 bp distal
Rr475909	regulatory region 475909	41 bp proximal
Tssr118843	transcription start site region 118843	635 bp downstream
Tssr118844	transcription start site region 118844	456 bp downstream
Tssr121728	transcription start site region 121728	1392 bp upstream
Tssr121729	transcription start site region 121729	576 bp upstream
Tssr121730	transcription start site region 121730	518 bp upstream
Tssr121731	transcription start site region 121731	504 bp upstream
Tssr121732	transcription start site region 121732	401 bp upstream
Tssr121733	transcription start site region 121733	41 bp downstream