rs29788712 SNP Detail

Summary

• ID
  rs29788712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:109762349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCCCGTC CATTCCAAGT
  CCACACACGG TGCCAACTGT GACTATTCTG AGATTCTATT TTCCTCATGA AGATGCTATT
  ACCTAACACT GGATGCTTAG AATTCAGGCT CTTCTTCACT CTGTGTGGTG TGGTTTTTTG
  AGGTACTGCC AGATGAGTCA CTCTTTATTC CATGTCTGTA AAAATGGTAA TTGCTCAGAA
  R
  AGATTTTTAA ACTGCTCATT TGAATAAGGA GTTTTGAAAT TGAATATATC TGAGCACCAA
  GGGATGCCCA TTAATTCATT TCAAAATGTT ATTTTCTCCT AATGGTCCCT ATTTTAATGT
  CAAAAGTTCC TTGCTTTGGG TTGTCTGCAG AGAACTGAAG AACTTAGAAA ACCCACTACA
  TCCACTAGAA AGGCAGTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46882962	NES10707990	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		G
ss320870674	CHEV_3_109657951	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29788712					SNP	G	G	G	G	G	G	A	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46882962	NES10707990	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109762349 () rs orientation: forward

Symbol	Name	Function Class
Ntng1	netrin G1	within coordinates
Rr65057	regulatory region 65057	1749 bp distal