rs29788851 SNP Detail

Summary

• ID
  rs29788851
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23720170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCATCATGC CCAAGGACAT
  CCAGCTGGCC CGTCGCATCC GCGGGGAGAG GGCTTAAGGG TTTCTGTTAA TCCACACAAC
  CACTTTAAAG GCTCTTCTTA GAGCCACCCA TCTTCCAAAA AAAGAACTGT AGCGCTTTTT
  CCAACTTGTG GGTATTAATC AGTTTCATTT GTGAAAGTGC TAGGTCTCCT TTCATCACAC
  Y
  GATCTATTAT AAGCAAGCAA TATTTTGGTA AGTGATATCT TTACCCTTTT TCATGGAAAT
  TGTACTCTTA GTTAGCAAAG CATAAAGATT GGAAAACTTT GCATGGTTAC AGTAATTTGG
  GCATTTACCG AATTTAAAAA TAAAATTATT AGTTGCAGAT GTTTACTTTG GAATTGTGAA
  CTTTCTGAAG GACAGAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47380468	NES11358919	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	T		C	T	C	C		C
ss324289735	CHEV_13_23627869	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29788851					SNP	C	C	C	C	T	C	C	C	C	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380468	NES11358919	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23720170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	527 bp distal
Gm55640	predicted gene, 55640	1746 bp upstream
H2ac10	H2A clustered histone 10	1696 bp downstream
H3c8	H3 clustered histone 8	91 bp downstream
Rr281120	regulatory region 281120	within coordinates
Rr403648	regulatory region 403648	563 bp downstream
Tssr118829	transcription start site region 118829	573 bp downstream
Tssr121713	transcription start site region 121713	781 bp upstream