rs29788968 SNP Detail

Summary

• ID
  rs29788968
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123622002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGATGATGAA GAGCTAATTA GAGTTCAGGT ACTGATGCTA TGGGAAATCG CTTCCATCGT
  AGATCACAGG CCGGTCAACA GTCAGGTGGT AAAGCACTTT TTTGGAGATA AATCTGAAGA
  AATAGAAACG GAGAATGAAT GTGTTACTTT TAGCGCAGCT TCTTTTGGGG TCTCATGTCC
  CTGATTGTGC TTGGCTGGGT GTAGGAACCA AAGTCTCGAA GGAACCAGCC TTTGGGGACC
  GGACAACTTA TAGATCACTT TAGTGTTCCT TGTTTTCCCT ATCCCATCAT CTGCCCTTCT
  W
  GTCTGGTACA GTTCTCTCTC TTCAGGAGGT CCCAGTACTC TCACTTATGG GCTTCTTGGG
  GTTTGAGTGA AGAGTGGGGC CGCAAGTCTC TGCCCTCACT TGTCTAGCTG CTCTGAGGTG
  CCAGTGGTCA GGACTGCATG GGGAAATGAA GTAGGTGCCA TGGGCTGTCT CAGCAGAGGC
  CAGAATGTAC AGGATGTTCA TGTGCCATGG GCAGAGTTCA TTTTCCAGCG CACTATACCA
  CCCAGGTTTC CCAGGAGCCT GTGGGAGGCT TGCATGCTGC CCTTCACTTC TCTTTCTCTC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46340630	mCV23332180	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29788968					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123622002 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	871 bp upstream
Tssr92158	transcription start site region 92158	865 bp upstream
Tssr92159	transcription start site region 92159	841 bp upstream
Tssr92160	transcription start site region 92160	466 bp upstream
Tssr92161	transcription start site region 92161	445 bp upstream
Tssr92162	transcription start site region 92162	1888 bp downstream