rs29789099 SNP Detail

Summary

• ID
  rs29789099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23703939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATACTTCA AGTATTTTGT
  TATGGACAAT ATTGCGTCGT ACTCGGCCCC ATGGTGTAAT GGTTAGCACT CTGGACTTTG
  AATCCAGCGA TCCGAGTTCA AATCTCGGTG GGACCTTCTT TCCTTTTGCC GTTCTACCAG
  TTACTGGATC ATCTTGCTTA CATTTCTTCC AGTGGCTGGA TCCTCCTTCT CAATTCTGGT
  Y
  TCTGCTAAGT AAGTATACGG GTGGTTAGAG AGTTAGCTGT TAGAGTGTCC ATATTTTTCC
  GCAGCAATCT TTTCTCTGGA ATCTCTTCAA AATATATTTT CGAATGCAAA AAGAAATGTT
  AGCAATAAGC TAACATTAGT TATTAGGAGA TATTCAGTGA CTGTTTAAGA GTAATATGGT
  ATAGTGGATT TTATGCTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47380270	NES11359690	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	T		C	T	C	T
ss148805702	ENSMUSSNP6090677	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss324289671	CHEV_13_23611638	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29789099					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380270	NES11359690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23703939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5357	CpG island 5357	1480 bp distal
Gm54514	predicted gene, 54514	1519 bp downstream
Gm61424	predicted gene, 61424	within coordinates
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	648 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	85 bp downstream
n-TStga1	nuclear encoded tRNA serine 1 (anticodon TGA)	1542 bp downstream
Rr281116	regulatory region 281116	within coordinates
Rr281117	regulatory region 281117	1661 bp proximal
Rr403642	regulatory region 403642	1938 bp downstream
Rr403643	regulatory region 403643	1406 bp downstream
Rr403644	regulatory region 403644	542 bp downstream
Rr403645	regulatory region 403645	within coordinates