rs29789102 SNP Detail

Summary

• ID
  rs29789102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23704027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCAATTCTG GTCTCTGCTA AGTAAGTATA CGGGTGGTTA
  GAGAGTTAGC TGTTAGAGTG TCCATATTTT TCCGCAGCAA TCTTTTCTCT GGAATCTCTT
  Y
  AAAATATATT TTCGAATGCA AAAAGAAATG TTAGCAATAA GCTAACATTA GTTATTAGGA
  GATATTCAGT GACTGTTTAA GAGTAATATG GTATAGTGGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss47380273	NES11359691	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29789102					SNP	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380273	NES11359691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23704027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5357	CpG island 5357	1568 bp distal
Gm54514	predicted gene, 54514	1607 bp downstream
Gm61424	predicted gene, 61424	within coordinates
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	736 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	173 bp downstream
n-TStga1	nuclear encoded tRNA serine 1 (anticodon TGA)	1630 bp downstream
Rr281116	regulatory region 281116	within coordinates
Rr281117	regulatory region 281117	1573 bp proximal
Rr403643	regulatory region 403643	1494 bp downstream
Rr403644	regulatory region 403644	630 bp downstream
Rr403645	regulatory region 403645	57 bp downstream