rs29789138 SNP Detail

Summary

• ID
  rs29789138
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37167415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCTCCACT TTCCAGGCAC GCAGCCAGGT GGCAGTGAAG
  AGCTACAAGG GTCTTCCGTG CTCATAAAAA TGACTGCCTC TAGCTTAAAG ATTCAGAGTA
  W
  ATTTCCACCT ATAAAAAGAA GCTGCGACGA GATTCTTGTG TACGAAACCA AGGGCAAAAT
  ACTGAGGGTG GAAAGGGAAA GTATTCGCCT CAAAAGTAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46342130	mCV24902313	ABI	CRAMUS_MOUSE	f	SNP	A	A						T
ss50674822	NES14008199	PERLEGEN	MM_PANEL2	f	SNP		A	T	A	A	A	A	T	A	T		A	T	T		T
ss136309808	ENSMUSSNP3254618	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						T
ss322906510	CHEV_9_37063704	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29789138					SNP	A	A	T	A	A	A	A	T	A	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674822	NES14008199	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37167415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	532 bp distal
Gm48081	predicted gene, 48081	within coordinates
Rr676656	regulatory region 676656	716 bp distal
Rr676657	regulatory region 676657	611 bp distal
Rr676658	regulatory region 676658	392 bp distal
Rr676659	regulatory region 676659	within coordinates
Rr676660	regulatory region 676660	62 bp distal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	706 bp upstream
Tssr88821	transcription start site region 88821	755 bp upstream
Tssr88822	transcription start site region 88822	727 bp upstream
Tssr88823	transcription start site region 88823	700 bp upstream
Tssr88824	transcription start site region 88824	677 bp upstream
Tssr88825	transcription start site region 88825	658 bp upstream
Tssr88826	transcription start site region 88826	566 bp upstream
Tssr88827	transcription start site region 88827	484 bp upstream
Tssr88828	transcription start site region 88828	454 bp upstream
Tssr88829	transcription start site region 88829	436 bp upstream
Tssr88830	transcription start site region 88830	408 bp upstream
Tssr88831	transcription start site region 88831	375 bp upstream