rs29789162 SNP Detail

Summary

• ID
  rs29789162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106520919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG AAAACCGTCT CCTAGAAGAG
  Y
  GGACAATTCT AGAGGGTGCT GACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46342224	mCV23588599	ABI	CRAMUS_MOUSE	f	SNP		C					T		T
ss47774023	NES11270997	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C		C	T	C	T		T	C	C	T		C
ss136939135	ENSMUSSNP7228932	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss323186507	CHEV_9_106546051	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29789162					SNP	C	C	C	C	T	C	T	C	T	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774023	NES11270997	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106520919 () rs orientation: forward

Symbol	Name	Function Class
Gm28111	predicted gene 28111	151 bp downstream
Grm2	glutamate receptor, metabotropic 2	814 bp downstream
Rr686373	regulatory region 686373	204 bp distal
Rr686374	regulatory region 686374	327 bp distal
Rr686375	regulatory region 686375	264 bp proximal