rs29789192 SNP Detail

Summary

• ID
  rs29789192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45316462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCTATCT ATCTATCTAT
  CTATCTATCT ATCTATCATC TATTTCTTGT TTACCTATCA CCTGTGTATC TATTTATATA
  TCATCTGCTA GTGTTGGATA TTAGCTTCTT GGAGGCCAAG TCGACCATCT GGAACCCAAA
  GAAGACTGTG GTCTTACAGA ATCCACACCA TAGTTACCAA GGGGATGGTT ACAGTGAGTG
  Y
  AGGACAGGCT GGGGGTGGGT GGGTGGGTAT GGCCATAGCA TTTGAGCCCT GGATCTCAAA
  GGATAGCCAT TATTTGTCTT CAACTCTCAC TGGATGTTTG ACCTTGGGCC TCAGCTTCTC
  CATACCTCAG ATAGCTCATG TCAAGAGAGG AACTAAAGCA AAAGGGAGAC AACAGCTAGA
  AAATGCTTTG TAAGCCCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46340133	mCV25163703	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss136411246	ENSMUSSNP2175706	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29789192					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45316462 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	245 bp proximal
Rr677906	regulatory region 677906	582 bp proximal
Tssr84786	transcription start site region 84786	1975 bp downstream
Tssr84787	transcription start site region 84787	1954 bp downstream
Tssr84788	transcription start site region 84788	1923 bp downstream
Tssr84789	transcription start site region 84789	1896 bp downstream
Tssr84790	transcription start site region 84790	771 bp upstream
Tssr84791	transcription start site region 84791	902 bp upstream
Tssr84792	transcription start site region 84792	950 bp upstream
Tssr84793	transcription start site region 84793	1955 bp upstream