rs29789237 SNP Detail

Summary

• ID
  rs29789237
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44218959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGGGAGCT GGTACTATAT
  AGTAGGTGAC AAGACAGCCT GGGCTAGAGA CACTTCCTCA AAAATCATTT TGTCTGTGTC
  CTATGTAAAT AAAAGTTTAG AGACAACATA AAAATAGGTC AAGTTGAGCC AGGTGTTCAC
  AGGCCTGTAA ACCCAAATCT GCTGCAGCTG TGGAGGCAGA AAGATCCTAC AGGCAATGTC
  K
  CGAGAAAGAG AATGTAGCTG TGGTCATGAT ACCTCACTTC TATAATCCTG TGTAGGCCTG
  GCTGGCCTTG AACTCACAGA GCTCTGCCTG CCTCTGCCTT CCGAGTGCTG GGATTAAAGG
  CATGCACCAC TACAACTAGC TACGATTTAC TTCTTTAATG TCTACAAGTA TTTGCTGCAT
  GGATGTGGGT ACAGCATGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46340528	mCV23033160	ABI	CRAMUS_MOUSE	f	SNP	G	T					T		T
ss47687462	NES11335223	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T	T		G	T	T	T	T	T	G	T
ss136393676	ENSMUSSNP4008028	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29789237					SNP	G	T	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47687462	NES11335223	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44218959 () rs orientation: forward

Symbol	Name	Function Class
C2cd2l	C2 calcium-dependent domain containing 2-like	1575 bp downstream
Cpgi21648	CpG island 21648	1588 bp distal
Hinfp	histone H4 transcription factor	1991 bp upstream
Rr195005	regulatory region 195005	42 bp proximal
Rr206299	regulatory region 206299	1358 bp distal
Rr368726	regulatory region 368726	1567 bp downstream
Tssr89139	transcription start site region 89139	1974 bp upstream