rs29789556 SNP Detail

Summary

• ID
  rs29789556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77920553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGATCTCTG CCTGAGAGGT
  ATCTGAGCTG GTCACCCCAC CCGATCCCCT GCTATCACAC CCTCAGGGAT GGCTCACTAG
  CAATGCCCCC AGACCAGATC CAGCTCTATC CTGCTGCCCA GATGAGGTAC AGGGCCTGAT
  CCCCCAAATG CTGCAGCAGG TGAGGGGCAA GAGCAGCTCT CCCACTCTCA TGACCCCAGC
  R
  CCAGGTCTCC TGACTGCCAT AGGCAGTGGG AGTGAACAGG GAAGAGGGTA TCTCTCCCTC
  ACCCATGCCA CTACAAGGAA ACTGGTGGTA GGACCAGCTC TCACACTTTC GTATCATCCT
  CAGCTGCAAC TCCTACAATG TGCAGGCTAC TCTCCTGAGT GCTGCAGCTG GCTAGCATGG
  GGGTCAGCTC TTTTGCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46343228	mCV22525223	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss136663617	ENSMUSSNP2352455	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss323015015	CHEV_9_77861078	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29789556					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77920553 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	701 bp downstream
Gm39375	predicted gene, 39375	1747 bp upstream
Gm69108	predicted gene, 69108	within coordinates
Rr683457	regulatory region 683457	765 bp proximal