rs29789627 SNP Detail

Summary

• ID
  rs29789627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23807326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGTCTA TATATCTATG
  GTTTTATTTC TGCCGCTTCT CCTAAGTTTT AAAATAATTT CTTAGTATAA TTCTTTTCTT
  TCTGTTCCCA TGGGTTGGGG GCGGGGCTGT TGCTTTTCTA TTTCTCTGGA CAAACTACTC
  CTTTGGGTTG AGGTACCTCA AATTCAGAGT ACTGGGGTCG GGGGAGAGTA CAAAACATAC
  Y
  TATGGTGCAG ACATAAAAAT GACTAATTTC CAAGAAACAT ATAAATGCTG TTTTCAACGT
  CTTTGGAAAT GAAGGTGGGA TTTACTTTGA GGAATTTCTC TTGGGTCTTG CATAGTTCTT
  CTGACATGTT TTAGGACTAA ATTGTAATGT GGTATATTAA AACTAGATAA CTGAGCCATT
  GATCAAGAGA AACACACATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47381767	NES11354420	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T		C	T	C		T
ss324290408	CHEV_13_23715212	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29789627					SNP	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47381767	NES11354420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23807326 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5367	CpG island 5367	1885 bp distal
Cpgi5368	CpG island 5368	599 bp distal
H1f4	H1.4 linker histone, cluster member	785 bp upstream
Rr403657	regulatory region 403657	1973 bp downstream
Rr475907	regulatory region 475907	1729 bp distal
Rr475908	regulatory region 475908	1161 bp distal
Rr475909	regulatory region 475909	295 bp distal
Tssr118843	transcription start site region 118843	1471 bp downstream
Tssr118844	transcription start site region 118844	1292 bp downstream
Tssr121729	transcription start site region 121729	1412 bp upstream
Tssr121730	transcription start site region 121730	1354 bp upstream
Tssr121731	transcription start site region 121731	1340 bp upstream
Tssr121732	transcription start site region 121732	1237 bp upstream
Tssr121733	transcription start site region 121733	780 bp upstream