rs29789630 SNP Detail

Summary

• ID
  rs29789630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23807328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTCTATA TATCTATGGT
  TTTATTTCTG CCGCTTCTCC TAAGTTTTAA AATAATTTCT TAGTATAATT CTTTTCTTTC
  TGTTCCCATG GGTTGGGGGC GGGGCTGTTG CTTTTCTATT TCTCTGGACA AACTACTCCT
  TTGGGTTGAG GTACCTCAAA TTCAGAGTAC TGGGGTCGGG GGAGAGTACA AAACATACTT
  R
  TGGTGCAGAC ATAAAAATGA CTAATTTCCA AGAAACATAT AAATGCTGTT TTCAACGTCT
  TTGGAAATGA AGGTGGGATT TACTTTGAGG AATTTCTCTT GGGTCTTGCA TAGTTCTTCT
  GACATGTTTT AGGACTAAAT TGTAATGTGG TATATTAAAA CTAGATAACT GAGCCATTGA
  TCAAGAGAAA CACACATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47381770	NES11354421	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G		A	G	A		A
ss324290409	CHEV_13_23715214	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29789630					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47381770	NES11354421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23807328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5367	CpG island 5367	1887 bp distal
Cpgi5368	CpG island 5368	601 bp distal
H1f4	H1.4 linker histone, cluster member	787 bp upstream
Rr403657	regulatory region 403657	1975 bp downstream
Rr475907	regulatory region 475907	1731 bp distal
Rr475908	regulatory region 475908	1163 bp distal
Rr475909	regulatory region 475909	297 bp distal
Tssr118843	transcription start site region 118843	1473 bp downstream
Tssr118844	transcription start site region 118844	1294 bp downstream
Tssr121729	transcription start site region 121729	1414 bp upstream
Tssr121730	transcription start site region 121730	1356 bp upstream
Tssr121731	transcription start site region 121731	1342 bp upstream
Tssr121732	transcription start site region 121732	1239 bp upstream
Tssr121733	transcription start site region 121733	782 bp upstream