rs29789806 SNP Detail

Summary

• ID
  rs29789806
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99242330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAC AGAGTGTGGA AGATGCACAC
  R
  TGAGGGAGAG TTGCAAAGAC AGTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46339829	mCV24875839	ABI	CRAMUS_MOUSE	f	SNP		A	A				G		G
ss61444644	NES16824610	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A		A	G	A	G	A	G	G	G	A
ss136846413	ENSMUSSNP3216637	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29789806					SNP	G	A	A	A	G	A	G	A	G	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61444644	NES16824610	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99242330 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	1572 bp distal
Esyt3	extended synaptotagmin-like protein 3	1720 bp upstream
Rr198328	regulatory region 198328	471 bp proximal
Rr206935	regulatory region 206935	1529 bp distal
Tssr91051	transcription start site region 91051	1725 bp upstream