rs29789996 SNP Detail

Summary

• ID
  rs29789996
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23720318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTATTAA TCAGTTTCAT
  TTGTGAAAGT GCTAGGTCTC CTTTCATCAC ACCGATCTAT TATAAGCAAG CAATATTTTG
  GTAAGTGATA TCTTTACCCT TTTTCATGGA AATTGTACTC TTAGTTAGCA AAGCATAAAG
  ATTGGAAAAC TTTGCATGGT TACAGTAATT TGGGCATTTA CCGAATTTAA AAATAAAATT
  M
  TTAGTTGCAG ATGTTTACTT TGGAATTGTG AACTTTCTGA AGGACAGAAC CACTAATATT
  GTAACTCAGA AAAATTAACT GATCTTCCAG TCTTGAAAGG GTTACAGGGA TTTACCATTC
  ACTTTATAGC GTGCTTAGTC TCCTCCCTAC CCACTAATAG ACCTCCCCCA CCCTCTTTTT
  AAGTGGACTC ATAGCTTAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47380474	NES11358921	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A	C		C	C	A	C		A
ss324289736	CHEV_13_23628017	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29789996					SNP	A	A	A	A	C	A	A	A	A	C	A	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380474	NES11358921	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23720318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5359	CpG island 5359	675 bp distal
Gm55640	predicted gene, 55640	1894 bp upstream
H2ac10	H2A clustered histone 10	1844 bp downstream
H3c8	H3 clustered histone 8	239 bp downstream
Rr281120	regulatory region 281120	within coordinates
Rr403648	regulatory region 403648	711 bp downstream
Tssr118829	transcription start site region 118829	721 bp downstream
Tssr121713	transcription start site region 121713	929 bp upstream