rs29790135 SNP Detail

Summary

• ID
  rs29790135
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23704577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGACAT CCCCCAAGCC
  CCTACACTCA CGTGTTGACA TTATTTAGAA GATTAGCTGT CTATTGAAAG TGCAAGCGGG
  ACTTTCAGTA CTTACCTAGC TGAAGGCACT CAGGATATAC CACATCTAGC ACTTGGATTT
  CAAGCCTCAG ATCTGTCTCT GTTTGGTGTC TTGGCTTTTC ATTTTTGCCC AAACTAGGAA
  Y
  ATACCCAGCA TGCATAGATA CACACACCTT TAGACTTACA CTCTCTCTTC TCAAATCCTA
  CCTCCTTGAG TAAAGGAAGC CCTGGCAACA TCACCCACTT TTCTTATTTT TCTTATTCAT
  TCTTATTAAA ACACACACTC CCCTCCCCCA ATTGCATTGG GTACAGAAGA AAAATGGAAG
  CATATTCTCT GGTGTCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47380276	NES11359692	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C		T	C	T	C
ss324289672	CHEV_13_23612276	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29790135					SNP	T	T	T	T	C	T	T	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380276	NES11359692	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23704577 () rs orientation: forward

Symbol	Name	Function Class
Gm61424	predicted gene, 61424	within coordinates
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	1286 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	723 bp downstream
n-TSgct4	nuclear encoded tRNA serine 4 (anticodon GCT)	1463 bp upstream
Rr281116	regulatory region 281116	176 bp distal
Rr281117	regulatory region 281117	1023 bp proximal
Rr403644	regulatory region 403644	1180 bp downstream
Rr403645	regulatory region 403645	607 bp downstream