rs29790138 SNP Detail

Summary

• ID
  rs29790138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23705015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGTTTG TCCCTAGGGT
  TTGTCTTTTG ATGCTGTGTA ACCTCACAGC TTCTCCACAG CACACTGACG TCTTTGATTT
  CAATGGAATG AGGTAGAAAC TTGATCAAAC AACAAGACAT TTCACATCTT GATTAGTATG
  ACAATTAAAG AGTCACTGGA TATCTCCTGA TAACTAATAA TGATAGGTCA CAGGTGTTAC
  R
  GCCTTTCTTT CCACTGTGAC CTTCTACATC AAGTCTACTC TGATGTACAA ACACCATTGT
  ATTCTATCTT TTCTTTTTGT AATGAACCAA TGTTCTTTCT TAGTGTATCA GTTATGCCTT
  TTACTGATTA GGTATCTGAA CAGTTCACCT GGTAGCATCC ACCTAGAATG AAACCTCGCT
  CTTGTTCCTT CCTCCAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47380279	NES11359693	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	A		A	G
ss324289674	CHEV_13_23612714	CHEVERUD	SCREENING_POP	f	SNP									G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs29790138					SNP	G	G	G	G	A	G	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380279	NES11359693	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23705015 () rs orientation: forward

Symbol	Name	Function Class
Gm61424	predicted gene, 61424	within coordinates
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	1724 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	1161 bp downstream
n-TSgct4	nuclear encoded tRNA serine 4 (anticodon GCT)	1025 bp upstream
Rr281116	regulatory region 281116	614 bp distal
Rr281117	regulatory region 281117	585 bp proximal
Rr403644	regulatory region 403644	1618 bp downstream
Rr403645	regulatory region 403645	1045 bp downstream