rs29790141 SNP Detail

Summary

• ID
  rs29790141
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23705126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGACATT TCACATCTTG
  ATTAGTATGA CAATTAAAGA GTCACTGGAT ATCTCCTGAT AACTAATAAT GATAGGTCAC
  AGGTGTTACG GCCTTTCTTT CCACTGTGAC CTTCTACATC AAGTCTACTC TGATGTACAA
  ACACCATTGT ATTCTATCTT TTCTTTTTGT AATGAACCAA TGTTCTTTCT TAGTGTATCA
  K
  TTATGCCTTT TACTGATTAG GTATCTGAAC AGTTCACCTG GTAGCATCCA CCTAGAATGA
  AACCTCGCTC TTGTTCCTTC CTCCAAATCA CGCAGCCCAC GTGCAAGTGC CGCAAAGCCC
  TTTCTTACAC CTTCTTGCTG AGTCTTCCCA AGTTTCTTCT TATGATGTAC TCTTACTTGC
  AGAGCAACAA TTCCAGTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47380282	NES11359694	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	T		T	T	G
ss324289675	CHEV_13_23612825	CHEVERUD	SCREENING_POP	f	SNP									G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs29790141					SNP	G	G	G	G	T	G	G	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380282	NES11359694	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23705126 () rs orientation: forward

Symbol	Name	Function Class
Gm61424	predicted gene, 61424	within coordinates
n-TQttg4	nuclear encoded tRNA glutamine 4 (anticodon TTG)	1835 bp downstream
n-TQttg5	nuclear encoded tRNA glutamine 5 (anticodon TTG)	1272 bp downstream
n-TSgct4	nuclear encoded tRNA serine 4 (anticodon GCT)	914 bp upstream
Rr281116	regulatory region 281116	725 bp distal
Rr281117	regulatory region 281117	474 bp proximal
Rr403644	regulatory region 403644	1729 bp downstream
Rr403645	regulatory region 403645	1156 bp downstream