rs29790529 SNP Detail

Summary

• ID
  rs29790529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:109686774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCAGGGT CAAGAGCATC
  CTATTTGTGA TCATGGGGTT TTTATATTCC TAGATGACTA GAGTATTGGT GGTAGAGGAG
  GAAGAAGATG GAAGTAAAGA TCTGATTTCA GGGTTTCTAT CTAAAGATTC TTAGAGGCCA
  GTTAAGTCAC AGGTCCAGGA AAGGGTGGAT AAGACACAAT ACAAACCACT GAACTGTGGA
  R
  TCTATATCTT CTTCAGTCTA TGTGCTCAAG TGTTGCCTTT GTGCTGCCTG CCTACAGGAG
  GCCAGCGTCC TGTGGGGACA TCTAATTAGA CTGGATAACT GGGCCAAGGC AGAGGAGGGT
  AAAGGTGGCC GTTCTAATAT TTGCCCTTAG GCTGTGTGAT CAGTCTTTAC CCCTTCATGA
  TAGGTAAGAT AGATTACTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46881582	NES10695538	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29790529					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46881582	NES10695538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109686774 () rs orientation: forward

Symbol	Name	Function Class
Ntng1	netrin G1	582 bp downstream
Rr583444	regulatory region 583444	1580 bp proximal