rs29790626 SNP Detail

Summary

• ID
  rs29790626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23807524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTTGGGTC TTGCATAGTT CTTCTGACAT GTTTTAGGAC
  TAAATTGTAA TGTGGTATAT TAAAACTAGA TAACTGAGCC ATTGATCAAG AGAAACACAC
  R
  TGAGAAATAT AGCTCAGAAC ATCTCTACTG CCTTCGTTAC AGAATCCTAG CCCCGTTACT
  GAACAGCTGT TCTCCATATA TGGCTACTCC TTATGGAAAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47381776	NES11354424	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29790626					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47381776	NES11354424	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23807524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5368	CpG island 5368	797 bp distal
H1f4	H1.4 linker histone, cluster member	983 bp upstream
Rr475907	regulatory region 475907	1927 bp distal
Rr475908	regulatory region 475908	1359 bp distal
Rr475909	regulatory region 475909	493 bp distal
Tssr118843	transcription start site region 118843	1669 bp downstream
Tssr118844	transcription start site region 118844	1490 bp downstream
Tssr121729	transcription start site region 121729	1610 bp upstream
Tssr121730	transcription start site region 121730	1552 bp upstream
Tssr121731	transcription start site region 121731	1538 bp upstream
Tssr121732	transcription start site region 121732	1435 bp upstream
Tssr121733	transcription start site region 121733	978 bp upstream