rs29790909 SNP Detail

Summary

• ID
  rs29790909
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42774932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGTGAAAA GACCCCAGCA TAGCCAATTA CAAGCAAGCA
  TCCTGATGTC ACTGTACACG GCACTGAGGA GAGATGGGCA GAATCATGCT CTCAGACAGC
  M
  AAAAAAATCA GCAGGGCCTC CCAGGTGTCT GGTGGTGAGC AGAGGGGCAC GGCTGGAAAT
  GCCTGCCCCA CTTAGGGCAT TCAGTCATTT CCAAGCAAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46342641	mCV23035083	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss136386093	ENSMUSSNP3093383	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29790909					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42774932 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	1507 bp upstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	within coordinates
Rr677287	regulatory region 677287	within coordinates
Rr677288	regulatory region 677288	1408 bp proximal