rs29791017 SNP Detail

Summary

• ID
  rs29791017
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57171100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAT GGGAGAAGAT GGGGCTGGGG
  M
  GGAGGGGCTG GGCTCCAGGT AGGAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46341451	mCV23499331	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss136517948	ENSMUSSNP6025161	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss322971866	CHEV_9_57111624	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29791017					SNP	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57171100 () rs orientation: forward

Symbol	Name	Function Class
1700017B05Rik	RIKEN cDNA 1700017B05 gene	1205 bp upstream
Cpgi21813	CpG island 21813	915 bp distal
Gm68485	predicted gene, 68485	1447 bp downstream
Gm68491	predicted gene, 68491	627 bp upstream
Rr679623	regulatory region 679623	1781 bp distal
Rr679624	regulatory region 679624	715 bp distal
Rr679625	regulatory region 679625	1327 bp proximal
Tssr2885	transcription start site region 2885	1924 bp upstream
Tssr89769	transcription start site region 89769	1836 bp upstream
Tssr89770	transcription start site region 89770	1237 bp upstream
Tssr89771	transcription start site region 89771	1208 bp upstream
Tssr89772	transcription start site region 89772	1020 bp upstream
Tssr89773	transcription start site region 89773	1972 bp downstream
Tssr89774	transcription start site region 89774	1990 bp downstream