rs29791308 SNP Detail

Summary

• ID
  rs29791308
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23706362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGGCGGTG AAGAACATCT
  GTGTGCTTAA AACTTCACAA GTGTTTCATC TTGTTGAAAC ACTTTCTCCT TGTTGCCATT
  TCCGTGTCGC TTGTATGGTA GATTTCTTCC CTCTTTCTTT TCAGGAACAA ATTTATTCTC
  CCTTTTGTCT TCATGTACCT CTCGATTTAC TCAATTTCGC ATTTTTGAGA TTTCAGGCCG
  R
  TTTATAGATA CGAAGTTGTC TTACCTTACA GTCTCCCCCG CATATCTCCA TCTCATTCTG
  CCTTTCACTA TTTCCTGACT TTGCCTTTTA GGAGTAGTTT CTCTCCCTTC GTGTTTCTAG
  GTGTTATTGT GCGCCAATAA TAGAAGCACA AAATTGGTGG GGATCACTAA TGAAGATGGT
  CTCTGAAAAT GTTTCTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47380291	NES11359587	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G		G	G	A	G
ss324289681	CHEV_13_23614061	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29791308					SNP	A	A	A	A	G	A	A	A	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380291	NES11359587	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23706362 () rs orientation: forward

Symbol	Name	Function Class
Gm61424	predicted gene, 61424	within coordinates
n-TSgct4	nuclear encoded tRNA serine 4 (anticodon GCT)	241 bp downstream
Rr281116	regulatory region 281116	1961 bp distal
Rr281117	regulatory region 281117	within coordinates