rs29791311 SNP Detail

Summary

• ID
  rs29791311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23706744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAAAATG TTTCTTCTCT
  TTGTCATTTG TCTCTTTTAT AGTTAAGGGT AGAAGGCGAC TATTCAGATT GGAAGCAGGA
  TCCTGCATAA CGTGGACACT GTGCTCTGTC TCTGAGATGC TTGATGTCAG GAACACCTGA
  GCAGTCATAT CCTGGCCTTC CCTGCACATT TTCTCTTTAT CTTTTATGTT TTACAAATAC
  Y
  AAACATGTGA CATATTTATA AAATAAATGC TTATAGACAT TGTGTGTGTG TGTGTGTGTG
  TGTGTGGAGG GATTTAGGGG ATTGGAACTT TCTCTAGGTG TAATGTATCT AGGGCACTGT
  CACTCTTAAG AGCATACCTG AGTGATGCTT TTAATTGCAT CTAAGTGTGT TAGAAAACGG
  GGAGGTGGAT GTGGGGATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47380294	NES11359588	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T		C	T	C
ss324289682	CHEV_13_23614443	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs29791311					SNP	C	C	C	C	T	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380294	NES11359588	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23706744 () rs orientation: forward

Symbol	Name	Function Class
Gm61424	predicted gene, 61424	within coordinates
n-TSgct4	nuclear encoded tRNA serine 4 (anticodon GCT)	623 bp downstream
Rr271078	regulatory region 271078	1857 bp proximal
Rr281117	regulatory region 281117	343 bp distal