rs29791339 SNP Detail

Summary

• ID
  rs29791339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:38640903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTTCGGCA GGATGGCAAA CAGTTTCATA AGATTTATTA
  ATGTAACTCA CATGAACTTT ACAAATGATA TGCCAAAACT TCATTTTCTC ACAAAATTAT
  Y
  ATTTATGCTC TTGAGACTTA CCCAGTTTTG TACGTGGCAC AATACTGTTT CATGCTTTAC
  ATTTTTATGT TCTTGATATC TCTACCTCAC ACACTTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46340452	mCV24014058	ABI	CRAMUS_MOUSE	f	SNP		C	C					C	T
ss47683122	NES11310911	PERLEGEN	MM_PANEL2	f	SNP	C			T	C	C	C		T	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29791339					SNP	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47683122	NES11310911	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:38640903 () rs orientation: forward

Symbol	Name	Function Class
Rr676757	regulatory region 676757	1042 bp distal
Tssr84421	transcription start site region 84421	1095 bp upstream
Tssr84422	transcription start site region 84422	1394 bp upstream
Tssr84423	transcription start site region 84423	1583 bp upstream
Vwa5a	von Willebrand factor A domain containing 5A	within coordinates