rs29792107 SNP Detail

Summary

• ID
  rs29792107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29783374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGTGTAAC ATACAACACA
  CACAGGATAC AAATACTAAA GCTACATACA CATTTCTTAT CATGTTGTTT ATTCTTTGTA
  ACATATAAAT GCTAAATGCA AACAAAAAAA TCTAAGCCTG AAAGCACTAG ACCAAGGCAC
  AAGTGTAAGG TCTTATTCAT AAAAAACTTA TCTTTATTTT TTTATTCTTG GCTATAAGAA
  Y
  ACTTAATAAA TAGCCGGTCT GATGATAGGA TTAGTATCCC TTGGGTAAAT TTTCTTTGCC
  AAGCCTGATT TCTGTGGCTG GACCCCCAAG ATTCAAAAGG GGCTAGCTCA CTGGATTCCC
  ACATGTTGGT TTGCTGGCAG GACTTAGAGA ACAAATCAAC TGTAGCCTCA TTCTTAGTTT
  CTCTGTGACT TCTTCAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46882408	NES10801172	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29792107					SNP	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46882408	NES10801172	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29783374 () rs orientation: forward

Symbol	Name	Function Class
Gm65548	predicted gene, 65548	within coordinates
Rr574681	regulatory region 574681	930 bp proximal