rs29792307 SNP Detail

Summary

• ID
  rs29792307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23708205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTCTCTC TCTCTCTATA TATATATATA TATATATACG
  TCAAGATTTC CCTTTAGCTA ATTGCATGAA GAAACTATTA ACCACAGCTT CCTCCAGATT
  Y
  TTACAGCCTA ACACTGCAGA AACTTTTTAA CAAAAGATTA ACCTGCCTGC CTTTTTCCCT
  CCAGCTGTAT CCAACAAGTC CATTCATTTC CTGGTTGCTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47380300	NES11359475	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29792307					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380300	NES11359475	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23708205 () rs orientation: forward

Symbol	Name	Function Class
Gm61424	predicted gene, 61424	1419 bp downstream
Rr271078	regulatory region 271078	396 bp proximal
Rr281117	regulatory region 281117	1804 bp distal
Rr281118	regulatory region 281118	795 bp proximal
Rr281119	regulatory region 281119	1595 bp proximal