rs29792310 SNP Detail

Summary

• ID
  rs29792310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23708319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATATATA TATATATATA
  TATACGTCAA GATTTCCCTT TAGCTAATTG CATGAAGAAA CTATTAACCA CAGCTTCCTC
  CAGATTCTTA CAGCCTAACA CTGCAGAAAC TTTTTAACAA AAGATTAACC TGCCTGCCTT
  TTTCCCTCCA GCTGTATCCA ACAAGTCCAT TCATTTCCTG GTTGCTCTTT GTGCATCTCA
  Y
  CAGCGTGCAC AACCGGTGAC GTCCCGCCTT TTCTGTATGC ATGTCCATCG TTTCTCCTTC
  CTATAGTAGA TCCAGTTGGG GCAACCTCTA CAATGAGCAG GTCATTGCAA TGTGCATATA
  TTTACTGACT GTAGGAATGT ATAATGCAGC ACTGCTTATA ACTGTAATGT AATAAGGGTT
  TGGTCACATG CATTATGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss47380303	NES11359476	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	T		T	T	C	T
ss324289688	CHEV_13_23616018	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29792310					SNP	C	C	C	C	T	C	C	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47380303	NES11359476	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23708319 () rs orientation: forward

Symbol	Name	Function Class
Gm61424	predicted gene, 61424	1533 bp downstream
Rr271078	regulatory region 271078	282 bp proximal
Rr281117	regulatory region 281117	1918 bp distal
Rr281118	regulatory region 281118	681 bp proximal
Rr281119	regulatory region 281119	1481 bp proximal