rs29792536 SNP Detail

Summary

• ID
  rs29792536
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37168006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATGGCTCA GTAAGAGCAC TTCCTGTGCA AGCATGAGAA
  CCGGAGTTTG AATCTCCAGC ATGCACATAA AAAAGCAGGC ATGGCTGCCC AGGCCACTGA
  M
  CTCAGCACTA GGAGAGGAAG ACAAGTAGAG CTTGAAAGCC TCACTGGCCA GCCAGCCAGC
  CCCCCAAACC GAGTGTCTGT TATTCAGTAA GAAACCCTG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46342359	mCV24902594	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss136309820	ENSMUSSNP3037263	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29792536					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37168006 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	1123 bp distal
Gm48081	predicted gene, 48081	561 bp downstream
Rr676656	regulatory region 676656	1307 bp distal
Rr676657	regulatory region 676657	1202 bp distal
Rr676658	regulatory region 676658	983 bp distal
Rr676659	regulatory region 676659	482 bp distal
Rr676660	regulatory region 676660	653 bp distal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	1297 bp upstream
Tssr88821	transcription start site region 88821	1346 bp upstream
Tssr88822	transcription start site region 88822	1318 bp upstream
Tssr88823	transcription start site region 88823	1291 bp upstream
Tssr88824	transcription start site region 88824	1268 bp upstream
Tssr88825	transcription start site region 88825	1249 bp upstream
Tssr88826	transcription start site region 88826	1157 bp upstream
Tssr88827	transcription start site region 88827	1075 bp upstream
Tssr88828	transcription start site region 88828	1045 bp upstream
Tssr88829	transcription start site region 88829	1027 bp upstream
Tssr88830	transcription start site region 88830	999 bp upstream
Tssr88831	transcription start site region 88831	966 bp upstream