rs29793415 SNP Detail

Summary

• ID
  rs29793415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109688853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAATCTG TGAAAATAGC
  ATGACTTAAA AATAAAAGTC TCTTAGTGCT CTGCCAACAG GCTTTGGCAT AATCTTGGCA
  ATCACTTAGA TATTTCTTTC TCTCTGTTTT TGTGGTTATA ATTTTTTCCC AGGTGGAAAA
  TAGTCTCATA TTTTGCAGAC GTTGTCCAAG CTAGTGACCA TCAATCCGTC TTCCTGGTTA
  Y
  TAAAGTTGTC AGCTGACTGT GTTCAGTCCA CACAAAAATC AGTGACGTGA CTGGGAAACT
  GCTGGGTGGT TGCTCCTTTC GTCTTAAGAA ACGGCCATAC AATTTCCTGA TAACATTTCT
  GCAGGAATTT TTATTCTTTA AATCTTCCAG TGTTAAAGCA ACAAGAAAAA ACATTTAAAA
  TGTCCTTTGG TGGAATCTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46881609	NES10695549	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29793415					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46881609	NES10695549	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109688853 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13717	CpG island 13717			1191 bp proximal
Ntng1	netrin G1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583444	regulatory region 583444			478 bp distal
Rr583445	regulatory region 583445			845 bp proximal