rs29794294 SNP Detail

Summary

• ID
  rs29794294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109690526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGATCTTG TGCACCCCCC
  TTCCCTCCAC AAACTAAGCA TGTGACTCCA ATTTCCAAAC AAATGTAGTC GGCTGCCTTT
  GTTTTGATCA TATTAGGCCT TTTCATATAG GTTTCCCCCT CCCCTTCCCC TGCAATCTTG
  GTTAATCTCC AGTTCAGGCT ATCGAATTTA AGGTAATGCA ATGCTCCTGG TTTGGAAATT
  Y
  TTGTGTACGT GAGACCTGTT GTGACCTCCT AGGTTTTTTT TAAAGGACAA GTGCCTGATA
  CAAGAAAACA GAACCTTGAA GCCAGATGAG TGCCGTTTAA AATGCAAAGC AGTGCTGCTA
  AAATGACCAA CAACCTCTAA GGTCAGGACA TCCATCCATC GTCCCTGAAC CGATTCCAGC
  CTTTTCGTGC ATGCAAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46881618	NES10695554	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29794294					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46881618	NES10695554	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109690526 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13717	CpG island 13717			260 bp distal
Ntng1	netrin G1			Intron
				Noncoding-Transcript-Variant
Rr583445	regulatory region 583445			807 bp distal