rs29794308 SNP Detail

Summary

• ID
  rs29794308
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99451127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGCTCGAC GAGCTGTCCG CACTCTTAAA TTTCAGTTTA
  CAGGTTTTCT TTCCTAACCG CTAGTAGGTG GAGTTACTAT CTACGGAGTC TGAAGTTCAC
  W
  TTCACATTCA TTATCTCACT CTACACCATT CCCTAGTTTC AGTATTCTCT CCCTCTTAAA
  GCTGGAGAAA CTGGTCTCAA AACTAGGTCT TCTGCCTGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46343480	mCV24326721	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		A
ss61443614	NES16826052	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	A	T		T	A	T	T	T	T	T	T
ss136848836	ENSMUSSNP800579	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29794308					SNP	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443614	NES16826052	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99451127 () rs orientation: forward

Symbol	Name	Function Class
Armc8	armadillo repeat containing 8	175 bp upstream
Cpgi22196	CpG island 22196	within coordinates
Rr401625	regulatory region 401625	within coordinates
Rr685420	regulatory region 685420	436 bp distal
Rr685421	regulatory region 685421	within coordinates
Tssr91072	transcription start site region 91072	396 bp upstream
Tssr91073	transcription start site region 91073	163 bp upstream