rs29794494 SNP Detail

Summary

• ID
  rs29794494
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44218705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGCACAT AATTTCACTC
  CTAGCACTCC AGAGGAAGCG GCAGGTGGAC CTCTGAGTTT AAGGCCAATC TGGTTTACAT
  AGTGAGTCCT GGACCACCCA AGGTTAGACA GGGAGAGAGA CCTCCCCTCC GAAAACAAAA
  TACAGCCAAC CACCACAATG AGCTTGGTGT GGTGACACAT ACACACTTGT ACTCCCAGGG
  S
  AGGGGCAGGG GAAGGGGAGG CAGGAAGGAG GATCATAAAA CCTGAGGGCA GTTTCCGGGA
  GCTGGTACTA TATAGTAGGT GACAAGACAG CCTGGGCTAG AGACACTTCC TCAAAAATCA
  TTTTGTCTGT GTCCTATGTA AATAAAAGTT TAGAGACAAC ATAAAAATAG GTCAAGTTGA
  GCCAGGTGTT CACAGGCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46342282	mCV23033159	ABI	CRAMUS_MOUSE	f	SNP	C	G	G	G
ss136393673	ENSMUSSNP2963670	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29794494					SNP	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44218705 () rs orientation: forward

Symbol	Name	Function Class
C2cd2l	C2 calcium-dependent domain containing 2-like	1829 bp downstream
Hinfp	histone H4 transcription factor	1737 bp upstream
Rr368726	regulatory region 368726	1313 bp downstream
Rr677607	regulatory region 677607	1748 bp distal
Rr677608	regulatory region 677608	1247 bp distal
Rr677609	regulatory region 677609	within coordinates
Tssr89139	transcription start site region 89139	1720 bp upstream