rs29795127 SNP Detail

Summary

• ID
  rs29795127
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49012439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCAGAGGCAG AGGCAGAGGC AGAGGCAGAG GCAGAGGCAG AGGCAGAGGC AGAGGCAGAG
  GCAGAGGCAG AGGCAGAGGC AGAGGCAGAG GCAGAGAGGC AGAGGCAGAG GCAGAGGCAG
  GAGGCAGGAG GCAGGAGGCA GGAGGCAGGA GGCAGGAGGC AGAGGCAGTG GAGTGCTATG
  TGCTCAGGAC TGGCCTGGTT TTATGTAAAT AGCGACAAGT CATTTAAAAC TACATTTCTC
  AAAAAAAAAA AAAAAAAAAA AAAGCCAGGA AAAAAGAGAA CCAGAAGAGC AGCTGGGACC
  M
  GGGCAGCTAG AGGAGAAGCT GATGATAGTT AATACGATTA GTGGCGCCTT TATGTGCCCA
  CGTTAGCAAA GCCTAAGAAG AAAACACAGG CAAAATACAG GTAGGGCTGG CAGTTCAGAG
  TGCTTCCTGT GCTTGCAGAG GACCTCAGTT CAGTTCCCAG CACCCCACAC TGTGGGGCTC
  ACAACCACGT GTAACTCCAG CTCCAAAGGA CCAGACACCC TCTTCTGGCC TGTGTAGCAC
  CTGCATACAC ATAGCATTTA CTTATACAGA CACGTATGTG GGCATAAACC TTAAAAAGAA
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46343488	mCV25370053	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29795127					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49012439 () rs orientation: forward

Symbol	Name	Function Class
Rr678512	regulatory region 678512	1161 bp proximal
Tmprss5	transmembrane protease, serine 5 (spinesin)	1555 bp upstream
Tssr85008	transcription start site region 85008	1581 bp upstream