rs29795281 SNP Detail

Summary

• ID
  rs29795281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106770654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC CTGTGCCATC AAGTGGAGAA
  R
  GGAGATGTCT GCATGTGATG ACTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46343674	mCV22323349	ABI	CRAMUS_MOUSE	f	SNP		G	G						A
ss47774682	NES11262131	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	A	G	A		A	G	G	A		G
ss136941114	ENSMUSSNP5344861	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss323187637	CHEV_9_106795786	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29795281					SNP	G	G	G	G	G	G	G	G	A	G	A	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774682	NES11262131	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106770654 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Cpgi22278	CpG island 22278	731 bp distal
Dock3	dedicator of cyto-kinesis 3	within coordinates
Manf	mesencephalic astrocyte-derived neurotrophic factor	1517 bp upstream
Rr368849	regulatory region 368849	1254 bp downstream
Rr686410	regulatory region 686410	1934 bp distal
Rr686411	regulatory region 686411	1647 bp distal
Rr686412	regulatory region 686412	1479 bp distal
Rr686413	regulatory region 686413	1231 bp distal
Rr686414	regulatory region 686414	525 bp distal
Rr686415	regulatory region 686415	within coordinates
Tssr86943	transcription start site region 86943	1332 bp downstream
Tssr86944	transcription start site region 86944	980 bp downstream
Tssr86945	transcription start site region 86945	968 bp downstream
Tssr91357	transcription start site region 91357	1535 bp upstream
Tssr91358	transcription start site region 91358	1508 bp upstream
Tssr91359	transcription start site region 91359	1485 bp upstream