rs29797540 SNP Detail

Summary

• ID
  rs29797540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36005682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAAGCCC CAAGGATTAG
  AATTTCCCCC TGGGAAAATC TATGCTGGGG TGAAGATAAG CCACTCACAG GAGCCCTGGT
  ACCAGAGGAT AAACTGGTCT CTCACGAGTA AAGACTTGTC TCTCTGGCTT CTAATAGCTT
  GGACTCAGTG TTAAATTTAC ATATGCATTA TTTCCAGCCT GTTGCTTCAC CTTTTATAAA
  Y
  CATAACACTA ACATGGGCAA AGCAGAGAGG ATTCAGAATT TTTGTCTGCT CAGTTCTGGC
  CAAAATAAAA TAAACCCTTC ACTTATTTTG GTGCATATGT GTGCAAAGAG GGGAAGGGTG
  GAGACCGAGC TTGTACATGC CTGTACATAC AGAGGCCAGA GGTTAAGATC AAGTGTCTAC
  CTTGATCATT ATCTCCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46883640	NES10953308	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29797540					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46883640	NES10953308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36005682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22664	CpG island 22664	1640 bp proximal
Rr690664	regulatory region 690664	1371 bp distal
Rr690665	regulatory region 690665	399 bp distal
Rr690666	regulatory region 690666	1463 bp proximal
Slc25a43	solute carrier family 25, member 43	1630 bp upstream
Tssr160747	transcription start site region 160747	1631 bp upstream
Tssr160748	transcription start site region 160748	1673 bp upstream