rs29797543 SNP Detail

Summary

• ID
  rs29797543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36005721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGCTGGG GTGAAGATAA
  GCCACTCACA GGAGCCCTGG TACCAGAGGA TAAACTGGTC TCTCACGAGT AAAGACTTGT
  CTCTCTGGCT TCTAATAGCT TGGACTCAGT GTTAAATTTA CATATGCATT ATTTCCAGCC
  TGTTGCTTCA CCTTTTATAA ATCATAACAC TAACATGGGC AAAGCAGAGA GGATTCAGAA
  Y
  TTTTGTCTGC TCAGTTCTGG CCAAAATAAA ATAAACCCTT CACTTATTTT GGTGCATATG
  TGTGCAAAGA GGGGAAGGGT GGAGACCGAG CTTGTACATG CCTGTACATA CAGAGGCCAG
  AGGTTAAGAT CAAGTGTCTA CCTTGATCAT TATCTCCACT CTTTTTCAAT GGATTGGTTT
  TACTTATTTA TTCTAAATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46883643	NES10953309	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29797543					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46883643	NES10953309	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36005721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22664	CpG island 22664	1601 bp proximal
Rr690664	regulatory region 690664	1410 bp distal
Rr690665	regulatory region 690665	438 bp distal
Rr690666	regulatory region 690666	1424 bp proximal
Slc25a43	solute carrier family 25, member 43	1591 bp upstream
Tssr160747	transcription start site region 160747	1592 bp upstream
Tssr160748	transcription start site region 160748	1634 bp upstream