rs29798506 SNP Detail

Summary

• ID
  rs29798506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:36006597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAACA GAAATAAAAT
  TGGAAAGTTG TTAATATTTT TAAATCCTTC TTAGATTCTG GCAAAGCCAC AGTTATCACC
  TTTTTACCTA TATTGTCCTA ACCCTTACCT AACAGAATCA CTGAATGTAT GTACTACTGC
  CACTATGCAA TCCTTGGGTG TGGCCCTTAT TAGGTCTAAC ATTGACCTAC ATAGGAACCC
  Y
  GATTCTGCGA GGTAGTGAAC ACTCAGGCTT GAGCAAGTGT CTCCGTGTCT TAGTTTCCTC
  TTCTCTACGG CAGCAGCTAG TCATACCCTC ATAAGCACCA CATACAGACT GGTTACTTCT
  TCCAGCCACT ATTCATTTCA TCTTTATAAA TTAAATTTTC ATTTATTAAA TTTTCATTTA
  ATCCTCGAAA GTACCATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46883646	NES10953287	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29798506					SNP	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46883646	NES10953287	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36006597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22664	CpG island 22664	725 bp proximal
Rr690665	regulatory region 690665	1314 bp distal
Rr690666	regulatory region 690666	548 bp proximal
Rr690667	regulatory region 690667	1717 bp proximal
Slc25a43	solute carrier family 25, member 43	715 bp upstream
Tssr160747	transcription start site region 160747	716 bp upstream
Tssr160748	transcription start site region 160748	758 bp upstream