rs29798935 SNP Detail

Summary

• ID
  rs29798935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23943362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAGCAAC TTTATCAGAT
  AAATCATGTC ACTGAGTTCT TTTGTCTTGG TATATAAATC ATGTTAGCCT GGAACTTACT
  ATGTAGCCCA GTCTCATCTT AAATTCATGA CCTATATGAA GGGTTTTTAA AGTGAATATA
  CATCATGAAT CATTTTATGC ACATCCCCAG GCAAAAGCCA CACTATGGTG CTGCCATAAT
  Y
  AATTCCTCAA TTAGGAATGA CAATTGGTAA TGTAAGGAAA AGTGAGAGGT TCCTATCCAC
  AGTAGAGGTC CACCAAGGAG ATATATATGT TAGGAATATT TTGGAAAAAG GCCAAGCCAC
  CTTAAAGGCC CACGTGATTA CTGCGATCCA AGATCTGCAT CTACATGACA TTTACTGCTC
  ATGAGAATCC ATTGTTTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383846	NES11347432	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	C	T	T	C			C	T		T
ss148808324	ENSMUSSNP5964562	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
ss324291491	CHEV_13_23851248	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29798935					SNP	T	T	T	T	T	C	T	C	T	T	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383846	NES11347432	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23943362 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1741 bp upstream
Cpgi5375	CpG island 5375	1882 bp distal
Cpgi5376	CpG island 5376	1300 bp proximal
H4c1	H4 clustered histone 1	1416 bp downstream
H4c2	H4 clustered histone 2	1970 bp downstream
Rr388131	regulatory region 388131	1521 bp downstream
Rr388132	regulatory region 388132	417 bp upstream
Rr475944	regulatory region 475944	1251 bp distal
Rr475945	regulatory region 475945	1841 bp proximal
Tssr121748	transcription start site region 121748	1750 bp upstream
Tssr121749	transcription start site region 121749	1788 bp downstream
Tssr121750	transcription start site region 121750	1830 bp downstream
Tssr121751	transcription start site region 121751	1844 bp downstream