rs29798938 SNP Detail

Summary

• ID
  rs29798938
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23943374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCAGATAA ATCATGTCAC
  TGAGTTCTTT TGTCTTGGTA TATAAATCAT GTTAGCCTGG AACTTACTAT GTAGCCCAGT
  CTCATCTTAA ATTCATGACC TATATGAAGG GTTTTTAAAG TGAATATACA TCATGAATCA
  TTTTATGCAC ATCCCCAGGC AAAAGCCACA CTATGGTGCT GCCATAATTA ATTCCTCAAT
  W
  AGGAATGACA ATTGGTAATG TAAGGAAAAG TGAGAGGTTC CTATCCACAG TAGAGGTCCA
  CCAAGGAGAT ATATATGTTA GGAATATTTT GGAAAAAGGC CAAGCCACCT TAAAGGCCCA
  CGTGATTACT GCGATCCAAG ATCTGCATCT ACATGACATT TACTGCTCAT GAGAATCCAT
  TGTTTTCTGC TGGCCTCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383849	NES11347433	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	A			A	T		T
ss148808329	ENSMUSSNP7063922	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T				A
ss324291492	CHEV_13_23851260	CHEVERUD	SCREENING_POP	f	SNP						T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29798938					SNP	T	T	T	T	A	T	A	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383849	NES11347433	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23943374 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1753 bp upstream
Cpgi5375	CpG island 5375	1894 bp distal
Cpgi5376	CpG island 5376	1288 bp proximal
H4c1	H4 clustered histone 1	1404 bp downstream
H4c2	H4 clustered histone 2	1982 bp downstream
Rr388131	regulatory region 388131	1533 bp downstream
Rr388132	regulatory region 388132	405 bp upstream
Rr475944	regulatory region 475944	1263 bp distal
Rr475945	regulatory region 475945	1829 bp proximal
Tssr121748	transcription start site region 121748	1762 bp upstream
Tssr121749	transcription start site region 121749	1776 bp downstream
Tssr121750	transcription start site region 121750	1818 bp downstream
Tssr121751	transcription start site region 121751	1832 bp downstream