rs29798941 SNP Detail

Summary

• ID
  rs29798941
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23943608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCAAGATC TGCATCTACA TGACATTTAC TGCTCATGAG
  AATCCATTGT TTTCTGCTGG CCTCAGGGAG CGGCTGGCAC ATTACCTAAT AGCAAAGAAA
  W
  ACCTCCCAAA GGAATTTAGA GGAGGGATAA AATGATCAAT CACCATCAAG AGAGATCACA
  TTTTCTTGTT CTTCTGTCTG CTCTCCTCCT GAAACTTTCC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
ss47383852	NES11347434	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
rs29798941					SNP	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383852	NES11347434	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23943608 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1987 bp upstream
Cpgi5376	CpG island 5376	1054 bp proximal
Gm61378	predicted gene, 61378	1823 bp upstream
H4c1	H4 clustered histone 1	1170 bp downstream
Rr388131	regulatory region 388131	1767 bp downstream
Rr388132	regulatory region 388132	171 bp upstream
Rr475944	regulatory region 475944	1497 bp distal
Rr475945	regulatory region 475945	1595 bp proximal
Tssr121748	transcription start site region 121748	1996 bp upstream
Tssr121749	transcription start site region 121749	1542 bp downstream
Tssr121750	transcription start site region 121750	1584 bp downstream
Tssr121751	transcription start site region 121751	1598 bp downstream