rs29799131 SNP Detail

Summary

• ID
  rs29799131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23934510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAAAATT ATGTACCTAA
  TCCGTTATGA GAAGCCCACC AAGGATGACC ATTCAGAAAC AGTTTGTAGC TGATTGAAAT
  GATTTATTCC TTGTATTGAG GATCACATCC TGGTATCTCA CTCTGCTGCT AGAGGGAGAA
  TTTTTTTCTG TTGTTGTTGT TGTTTGTTTG TAACAAGCAG TTTAAAAGAA GCTACATTAG
  Y
  TAGGGAATCT TGAACTCTGG TTCATAAAAC AGTTGGGTAA TATTCTATAA GATTCTACGT
  CAAGATCAAG AAGTAGTTAA ACCTGAAATG GCCTTACCAG GAATACAAGA TGGAGGAAGT
  GCCACACTGA CTTTCCTTGT CATAAAAACA CAATTCTAAA CCCTGAAAAC AGGACAGTAG
  CTTAACAACT CAGAAACACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383663	NES11348009	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	T		T	T	C		C
ss324291403	CHEV_13_23842396	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29799131					SNP	C	C	C	C	T	C	T	C	C	T	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383663	NES11348009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23934510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	975 bp proximal
Gm54518	predicted gene, 54518	851 bp downstream
H2ac4	H2A clustered histone 4	599 bp upstream
H3c2	H3 clustered histone 2	1818 bp upstream
Rr403663	regulatory region 403663	312 bp upstream
Rr403664	regulatory region 403664	1558 bp upstream
Rr475938	regulatory region 475938	109 bp proximal
Rr475939	regulatory region 475939	845 bp proximal
Rr475940	regulatory region 475940	1082 bp proximal
Rr475941	regulatory region 475941	1250 bp proximal
Tssr118860	transcription start site region 118860	542 bp upstream
Tssr118861	transcription start site region 118861	580 bp upstream
Tssr118862	transcription start site region 118862	676 bp upstream
Tssr118863	transcription start site region 118863	1814 bp upstream
Tssr121747	transcription start site region 121747	1668 bp downstream