rs29799794 SNP Detail

Summary

• ID
  rs29799794
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23944008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAATCAA GGAGAGATAC
  TTAGACCTAG CTAATAGCGA CAGGATGAGG TTCAAAACTC TCCTTTTTAA ATGATGACTA
  AAATAAAGAC AATCGAAAGA AAAAATACAT AGACAACAAA ACCACAAGAA GATGAAGATG
  GAGGAGGAAG GCAAAAAAGT GCCAGCAAGC TGGGTGTGGT GGTAAACAGT AATGCTAGAA
  Y
  TTGGGTGAAG GATCAAGTTG TCTAGGCCAT TCATTGCAGG AAAAGTTATT TTCCTATTTT
  CAGTCACAAA GTGAGCTCAC ATCCCCTTCA CCTGTGCTCT CAAACTGTCA CTGCTTCACC
  CCAAAATTGT AGCAGCTTTC CTCAATCTGC CTACACTGGC CAATCACATT AACAAAAATC
  AGACTACAGG AAGCTATTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47383855	NES11347435	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	T		T	T	C	T		C
ss324291495	CHEV_13_23851894	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29799794					SNP	C	C	C	C	T	C	T	C	C	T	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383855	NES11347435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23944008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	654 bp proximal
Gm61378	predicted gene, 61378	1423 bp upstream
H3c1	H3 clustered histone 1	1860 bp downstream
H4c1	H4 clustered histone 1	770 bp downstream
Rr388132	regulatory region 388132	within coordinates
Rr475944	regulatory region 475944	1897 bp distal
Rr475945	regulatory region 475945	1195 bp proximal
Tssr121749	transcription start site region 121749	1142 bp downstream
Tssr121750	transcription start site region 121750	1184 bp downstream
Tssr121751	transcription start site region 121751	1198 bp downstream