rs29799797 SNP Detail

Summary

• ID
  rs29799797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23944187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTAAACAG TAATGCTAGA
  ACTTGGGTGA AGGATCAAGT TGTCTAGGCC ATTCATTGCA GGAAAAGTTA TTTTCCTATT
  TTCAGTCACA AAGTGAGCTC ACATCCCCTT CACCTGTGCT CTCAAACTGT CACTGCTTCA
  CCCCAAAATT GTAGCAGCTT TCCTCAATCT GCCTACACTG GCCAATCACA TTAACAAAAA
  Y
  CAGACTACAG GAAGCTATTC CAAGAACACC CCTGCCTTTA CCAACCTTGG CCACGGGGTG
  AAGCTGTAAA GGGGGTCATG AAATGGAAGC TACTATACTT ACACGGCATT AGAGTTCTCA
  AATACAATGC CATTTATCTT AGTTGTGTAA TCACCATGTT AAGACATGAA TCCGCTGGGA
  CTCTGCCTGT TCTGAGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47383858	NES11347436	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C		C	C	T	T		T
ss324291496	CHEV_13_23852073	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29799797					SNP	T	T	T	T	C	T	C	T	T	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383858	NES11347436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23944187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	475 bp proximal
Gm61378	predicted gene, 61378	1244 bp upstream
H3c1	H3 clustered histone 1	1681 bp downstream
H4c1	H4 clustered histone 1	591 bp downstream
Rr388132	regulatory region 388132	within coordinates
Rr475945	regulatory region 475945	1016 bp proximal
Tssr121749	transcription start site region 121749	963 bp downstream
Tssr121750	transcription start site region 121750	1005 bp downstream
Tssr121751	transcription start site region 121751	1019 bp downstream