rs29799800 SNP Detail

Summary

• ID
  rs29799800
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23944498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTCTCA AATACAATGC
  CATTTATCTT AGTTGTGTAA TCACCATGTT AAGACATGAA TCCGCTGGGA CTCTGCCTGT
  TCTGAGAAAG AGAAACAAAA CAAAACAAAA AACAATTTTT GCCATTGCAT TGTTGGCAAA
  AAGGCCACAT CTCAGGGCAA ATGGTTGAGA ATTATGAGGA ATGTTTAGTT CTGCCTTACA
  K
  GGACTTTACT TGAACCCCGC CCGGACTTAC AGACGTTTTT AATGTGGTTA GATGAGAACC
  ATGCTTAACT GCTTTCCTAT CCCTCACTCA GGCTTTCCTC AAGGAACAGA GTTTAGCTGC
  GCACACTTAA TAAGGCAGTA TTTCTTTTCC AAGAAAATGG TGCAAACTTG ACCTTACAAT
  TCTCCAAAGG CACTCAAGGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383861	NES11347437	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	G	T	T	G		G	G	T		T
ss324291497	CHEV_13_23852384	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29799800					SNP	T	T	T	T	G	T	G	T	T	G	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383861	NES11347437	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23944498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	164 bp proximal
Gm61378	predicted gene, 61378	933 bp upstream
H3c1	H3 clustered histone 1	1370 bp downstream
H4c1	H4 clustered histone 1	280 bp downstream
Rr388132	regulatory region 388132	within coordinates
Rr475945	regulatory region 475945	705 bp proximal
Rr475946	regulatory region 475946	1861 bp proximal
Tssr121749	transcription start site region 121749	652 bp downstream
Tssr121750	transcription start site region 121750	694 bp downstream
Tssr121751	transcription start site region 121751	708 bp downstream
Tssr121752	transcription start site region 121752	1847 bp downstream
Tssr121753	transcription start site region 121753	1863 bp downstream