rs29800287 SNP Detail

Summary

• ID
  rs29800287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:36010922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGAAGAG CAAAGAATCA
  CATAGACTGG GTTTGCTGAC TTGATTTCTT GACAGATGGT TTTCTTTCTG AAAACTGAAG
  AGAAACCATT CCAGGGAAAG ACGAGGTATA GTAAGAAAGG TTGATTAGTC GTGAAGGCAT
  CTGCCCTACA TAAAGATGAC AATCATGGGT AATCAGTATA TCCATTCATT TGTCCTCTGT
  Y
  CTGACCACGA AGTTGCAAAA CAGGTGACTG GGAATCACAG CACACTGTCT GATTGGAACA
  AAACATGCAG CGTAATCAGT GACTGGAGTG GATGAAAAAA AAAATTTGTC TATAATTACA
  ATGACTGAGC TCAAGCTTAA AAACAGATCC TGTGGCTCCT TAGTCCAGGG CTCTGCCTAC
  TACCACACAG CTAAAATCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46883667	NES10953203	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29800287					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46883667	NES10953203	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:36010922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Slc25a43	solute carrier family 25, member 43			Intron
				Noncoding-Transcript-Variant