rs29800307 SNP Detail

Summary

• ID
  rs29800307
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23934920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTCAGAG TTTCTAAAAC
  TACAAAGACC TTGATGAAAA CAACAAGAAA ATCAGTCAGT TACTTATTTC CATTTAAGTA
  AAAACTGGAA AAGAAAGTAA AAAAAAGTTC TTAACTATTA ATCATGAAAA CCAGAGTTTA
  AATCCCAGAA TCTACGTGGT TTTTATTTTT TAAAGAACGA TATGAAAAAG GACTGGATGC
  K
  AAAAATAAAA TGCAGGCCTT TATGCAAATG AGGAGCTCAA ATTCTGGCTT TCTATTGGGT
  ACGATATATT AACCAATGGG AGAAACACAA ACAGAATACC TCCAGTTAGT ATAAATGCTT
  GCTGTTCAGT TGCAGAATTT ACTATATATT CTTTTCCTTT CTCTGCTTTG CCTTTACTGA
  TACTTAAACG CATACATGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47383669	NES11348011	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	T		T	T	G		G
ss324291405	CHEV_13_23842806	CHEVERUD	SCREENING_POP	f	SNP										G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29800307					SNP	G	G	G	G	T	G	G	G	T	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383669	NES11348011	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23934920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	565 bp proximal
Gm54518	predicted gene, 54518	441 bp downstream
H2ac4	H2A clustered histone 4	189 bp upstream
H3c2	H3 clustered histone 2	1408 bp upstream
Rr403663	regulatory region 403663	within coordinates
Rr403664	regulatory region 403664	1148 bp upstream
Rr475938	regulatory region 475938	within coordinates
Rr475939	regulatory region 475939	435 bp proximal
Rr475940	regulatory region 475940	672 bp proximal
Rr475941	regulatory region 475941	840 bp proximal
Tssr118860	transcription start site region 118860	132 bp upstream
Tssr118861	transcription start site region 118861	170 bp upstream
Tssr118862	transcription start site region 118862	266 bp upstream
Tssr118863	transcription start site region 118863	1404 bp upstream
Tssr121747	transcription start site region 121747	1258 bp downstream